snpeff (5.2.e+dfsg-1) unstable; urgency=medium

  * New upstream version 5.2.e+dfsg
  * Refreshing patches
  * Raising Standards version to 4.7.0 (no change)
  * Updating the list of files to remove when repacking

 -- Pierre Gruet <pgt@debian.org>  Sat, 05 Oct 2024 22:58:54 +0200

snpeff (5.2.b+dfsg-1) unstable; urgency=medium

  [ Pierre Gruet ]
  * New upstream version
  * Refreshing patches
  * Changing the path to tests in the autopkgtest
  * Alleviating d/rules and correcting paths in the patches as build-time
    test .java files are now conveniently located under src/test
  * Removing now unused Lintian override

  [ Andreas Tille ]
  * Remove trailing whitespace in debian/copyright (routine-update)
  * Lintian-override for all source-is-missing issues
  * d/watch: fix download name

 -- Andreas Tille <tille@debian.org>  Tue, 28 Nov 2023 16:56:18 +0100

snpeff (5.1+d+dfsg-3) unstable; urgency=medium

  * Lowering heap allocation for non 64-bit architectures

 -- Pierre Gruet <pgt@debian.org>  Fri, 20 Jan 2023 20:55:32 +0100

snpeff (5.1+d+dfsg-2) unstable; urgency=medium

  * Depending on biojava6 instead of biojava5
  * Raising Standards version to 4.6.2 (no change)
  * Update Lintian override info format in d/source/lintian-overrides on line 2
  * Adding a Lintian override for the bad-jar-name tag
  * Correcting the mismatched Lintian overrride about embedded JS

 -- Pierre Gruet <pgt@debian.org>  Thu, 12 Jan 2023 21:21:57 +0100

snpeff (5.1+d+dfsg-1) unstable; urgency=medium

  * New upstream version 5.1+d+dfsg
  * Raising Standards version to 4.6.1 (no change)
  * Refreshing patches
  * Mangling in debian/watch to follow upstream versioning scheme
  * Updating the list of files to exclude when repacking
  * (Build-)depending only on needed -doc packages (Closes: #1012257)

 -- Pierre Gruet <pgt@debian.org>  Thu, 02 Jun 2022 20:43:41 +0200

snpeff (5.1+dfsg-2) unstable; urgency=medium

  * Depending on libbiojava5-java instead of libbiojava4-java
  * Refreshing patches
  * Refreshing d/maven.rules
  * Removing junit4-doc as build-dependency
  * Putting changes related to FastQ classes and biojava5 classes into two
    different patches

 -- Pierre Gruet <pgt@debian.org>  Thu, 24 Feb 2022 07:09:20 +0100

snpeff (5.1+dfsg-1) unstable; urgency=medium

  * New upstream version 5.1+dfsg
  * Using tags instead of releases in d/watch
  * Refreshing patches
  * Refreshing d/copyright
  * Updating classpath, dependencies list and related Maven rules, notably
    switching to junit5
  * The path of the config file in the source has moved
  * Using Debian-packaged biojava4 instead of biojava6, while upstream
    previously used biojava3
  * Disabling tests needing files that are not available
  * Marking the doc package as Multi-Arch: foreign
  * Adding a Lintian override for a file with very-long-lines
  * Removing README.source about Mavenization
  * Having the conffile provided by libsnpeff-java instead of snpeff, as the
    lib itself now needs it
  * Adding autopkgtest based on unit tests

 -- Pierre Gruet <pgt@debian.org>  Wed, 09 Feb 2022 13:12:02 +0100

snpeff (4.3t+dfsg1-2) unstable; urgency=medium

  * Source-only upload
  * Adding a Lintian override for "we" in long description

 -- Pierre Gruet <pgt@debian.org>  Sat, 22 Jan 2022 20:45:23 +0100

snpeff (4.3t+dfsg1-1) experimental; urgency=medium

  * Initial release (Closes: #986141)

 -- Pierre Gruet <pgt@debian.org>  Sat, 22 Jan 2022 14:41:57 +0100
