PHAST(1)

NAME
phast - phylogenetic analysis with space/time models

DESCRIPTION
The PHAST package contains the following programs:

all_dists
    hmm_view phastBias

base_evolve
    indelFit phastCons

chooseLines
    indelHistory phastMotif

clean_genes
    maf_parse phastOdds

consEntropy
    makeHKY phyloBoot

convert_coords
    modFreqs phyloFit

display_rate_matrix
    msa_diff phyloP

dless
    msa_split prequel

dlessP
    msa_view refeature

draw_tree
    pbsDecode stringiphy

eval_predictions
    pbsEncode test

exoniphy
    pbsScoreMatrix tree_doctor

hmm_train
    pbsTrain treeGen

hmm_tweak
    phast

    For help, type the program's name followed by -h in your command line window.