# gthsplit(1)

## NAME

gthsplit - split GenomeThreader output files

## SYNOPSIS

*gthsplit*  -alignmentscore | -coverage [option ...] [file ...]

## DESCRIPTION

Split GenomeThreader output files containing intermediate results.

## OPTIONS

*-alignmentscore*::
  split according to the overall alignment score (scr)
                   default: no

*-coverage*::
  split according to coverage (cov)
                   default: no

*-range*::
  set the percentage range used to create the sets
                   default: 5

*-minalignmentscore*::
  set the minimum alignment score for spliced alignments to be
                   included into the set of spliced alignments
                   default: 0.00

*-maxalignmentscore*::
  set the maximum alignment score for spliced alignments to be
                   included into the set of spliced alignments
                   default: 1.00

*-mincoverage*::
  set the minimum coverage for spliced alignments to be
                   included into the set of spliced alignments
                   default: 0.00

*-maxcoverage*::
  set the maximum coverage for spliced alignments to be
                   included into the set of spliced alignments
                   default: 9999.99

*-v*::
  be verbose
                   default: no

*-gzip*::
  write gzip compressed output file(s)
                   default: no

*-bzip2*::
  write bzip2 compressed output file(s)
                   default: no

*-force*::
  force writing to split files
                   default: no

*-help*::
  display help and exit

*-version*::
  display version information and exit

